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BACKTRACKER(1)		     Generic Mapping Tools		BACKTRACKER(1)

NAME
       backtracker - Reconstruct points, flowlines and hotspot tracks

SYNOPSIS
       backtracker    [infile(s)]    -Erotations.txt   |   -elon/lat/angle   [
       -A[young/old] ] [ -C ] [ -Df|b ] [ -Fdrift.txt  ]  [  -H[i][nrec]  ]  [
       -Lf|bstep ] [ -Nupper_age ] [ -Qfixed_age ] [ -Sfilestem ] [ -Tzero_age
       ] [ -V ] [ -W[a|t] ] [ -:[i|o] ] [ -b[i|o][s|S|d|D[ncol]|c[var1/...]] ]
       [ -m[i|o][flag] ]

DESCRIPTION
       backtracker reads (longitude, latitude, age) positions from infiles [or
       standard input] and computes  rotated  (x,y,t)  coordinates  using  the
       specified rotation parameters.  It can either calculate final positions
       [Default] or create a sampled track (flowline or hotspot track) between
       the  initial  and  final	 positions.  The former mode allows additional
       data fields after the first 3 columns which must have  (longitude,lati‐
       tude,age).   See	 option	 -:  on	 how  to read (latitude,longitude,age)
       files.
	    No space between the option flag  and  the	associated  arguments.
       Use upper case for the option flags and lower case for modifiers.

       infile(s)
	      Data  file(s)  to be projected.  If not given, standard input is
	      read.

       -E     Give file with rotation parameters.  This file must contain  one
	      record  for  each rotation; each record must be of the following
	      format:

		   lon lat tstart [tstop] angle [ khat a b c d e f g df ]

	      where tstart and tstop are in Myr	 and  lon  lat	angle  are  in
	      degrees.	 tstart	 and  tstop  are the ages of the old and young
	      ends of a stage.	If -C is set then a total reconstruction rota‐
	      tion is expected and tstop is implicitly set to 0 and should not
	      be specified in the file.	 If a  covariance  matrix  C  for  the
	      rotation is available it must be specified in a format using the
	      nine optional terms listed in brackets.  Here, C = (g/khat)*[  a
	      b	 d; b c e; d e f ] which shows C made up of three row vectors.
	      If the degrees of freedom (df) in fitting the rotation is	 0  or
	      not  given  it  is  set to 10000.	 Blank lines and records whose
	      first column contains # will be ignored.

       -e     Alternatively, specify  the  longitude,  latitude,  and  opening
	      angle  (all  in  degrees	and separated by /) for a single total
	      reconstruction rotation that should  be  applied	to  all	 input
	      points.

OPTIONS
       -A     Used  in	conjunction  with  -Lb|f  to limit the track output to
	      those sections whose predicted ages lie  between	the  specified
	      young  and old limits.  If -LB|F is used instead then the limits
	      apply to the stage ids (id 1 is the youngest stage).  If no lim‐
	      its  are	specified  then	 individual limits for each record are
	      expected in columns 4 and 5 of the input file.

       -C     Expect Total Reconstruction Rotations rather than Forward	 Stage
	      Rotations	 [Default].   File format is similar to the stage pole
	      format except that the tstart column is not present (assumed  to
	      be 0 Ma).	 Requires -E.

       -D     Set  the	direction  to  go:  -Df will go backward in time (from
	      younger to older positions), while -Db will go forward  in  time
	      (from  older to younger positions) [Default].  Note: For -Db you
	      are specifying the age at the given location,  whereas  for  -Df
	      you  are	not;  instead you specify the age at the reconstructed
	      point.

       -F     Supply a file with lon, lat, age records that contains the  his‐
	      tory  of	hotspot motion for the current hotspot.	 If given, the
	      reconstructions will only use the 3rd data input	column	(i.e.,
	      the age) to obtain the location of the hotspot at that time, via
	      an interpolation of the hotspot motion history.	This  adjusted
	      location	is  then  used	to  reconstruct	 the point or path [No
	      drift].

       -H     Input file(s) has header record(s).  If used, the default number
	      of  header records is N_HEADER_RECS.  Use -Hi if only input data
	      should have  header  records  [Default  will  write  out	header
	      records  if  the	input  data  have them]. Blank lines and lines
	      starting with # are always skipped.

       -L     Specify a sampled path between initial and final	position:  -Lf
	      will  draw  particle  flowlines,	while  -Lb will draw backtrack
	      (hotspot track) paths.  Append sampling interval in km.  If step
	      <	 0 then only the rotation times will be returned.  When -LF or
	      -LB is used, the third output column will contain the  stage  id
	      (1  is  youngest)	 [Default is along-track predicted ages].  You
	      can control the direction of the paths by using -D.

       -N     Set the maximum age to extend the oldest stage rotation back  in
	      time [Default is no extension].

       -Q     Assign  a	 fixed	age  to all positions.	Only lon, lat input is
	      expected [Default expects	 longitude,  latitude,	age].	Useful
	      when the input are points defining isochrons.

       -S     When  -L	is set, the tracks are normally written to stdout as a
	      multisegment file.  Specify a filestem to have each track	 writ‐
	      ten  to filestem.#, where # is the track number.	The track num‐
	      ber is also copied to the 4th output column.

       -T     Set the current time [Default is 0 Ma].

       -V     Selects verbose mode, which will send progress reports to stderr
	      [Default runs "silently"].

       -W     Rotates  the  given  input (lon,lat,t) and calculates the confi‐
	      dence ellipse for the projected point.   The  input  point  must
	      have  a time coordinate that exactly matches a particular finite
	      rotation time, otherwise the point will be skipped.  Append t or
	      a	 to  output  time  or angle, respectively, after the projected
	      lon, lat.	 After these 2-3 items, we write azimuth, major, minor
	      (in  km)	for the 95% confidence ellipse.	 See -D for the direc‐
	      tion of rotation.

       -:     Toggles between  (longitude,latitude)  and  (latitude,longitude)
	      input and/or output.  [Default is (longitude,latitude)].	Append
	      i to select input only or o to  select  output  only.   [Default
	      affects both].

       -bi    Selects binary input.  Append s for single precision [Default is
	      d	 (double)].   Uppercase	 S  or	D  will	 force	byte-swapping.
	      Optionally,  append  ncol,  the number of columns in your binary
	      input file if it exceeds the columns needed by the program.   Or
	      append  c	 if  the  input	 file  is  netCDF.  Optionally, append
	      var1/var2/... to specify the variables to be read.  [Default  is
	      3 input columns].

       -bo    Selects  binary  output.	Append s for single precision [Default
	      is d (double)].  Uppercase S  or	D  will	 force	byte-swapping.
	      Optionally,  append  ncol, the number of desired columns in your
	      binary output file.  [Default depends on settings].

       -m     Multiple segment file(s).	 Segments are separated by  a  special
	      record.	For  ASCII  files  the	first  character  must be flag
	      [Default is '>'].	 For binary files all fields must be  NaN  and
	      -b must set the number of output columns explicitly.  By default
	      the -m setting applies to both input and output.	 Use  -mi  and
	      -mo to give separate settings to input and output.

EXAMPLES
       To backtrack the (x,y,t) points in the file seamounts.d to their origin
       (presumably the hotspot), using the DC85.d Euler poles, run

       backtracker seamounts.d -Db -E DC85.d > newpos.d

       To project flowlines forward from the (x,y,t) points stored in  several
       3-column, binary, double precision files, run

       backtracker points.* -Df -E DC85.d -Lf 25 -bo -bi3 > lines.b

       This file can then be plotted with psxy -M.

       To compute the predicted Hawaiian hotspot track from 0 to 80 Ma every 1
       Ma, given a history of hotspot motion file (HIdrift.txt) and a  set  of
       total reconstruction rotations for the plate (PAC_APM.d), try

       echo 204 19 80 | backtracker -Df -C -E PAC_APM.d -Lb 1 > path.d

COORDINATES
       Data  coordinates  are assumed to be geodetic and will automatically be
       converted to geocentric before spherical rotations are  performed.   We
       convert	back  to  geodetic coordinates for output.  Note: If your data
       already are geocentric, you can avoid the conversion by using  --ELLIP‐
       SOID=sphere.

SEE ALSO
       GMT(1),	 project(1),   grdrotater(1),	grdspotter(1),	mapproject(1),
       hotspotter(1), originator(1)

REFERENCES
       Wessel, P., 1999, "Hotspotting" tools  released,	 EOS  Trans.  AGU,  80
       (29), p. 319.

GMT 4.5.14			  1 Nov 2015			BACKTRACKER(1)
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