Bio::Tools::PrositeScaUser Contributed Perl DocumentBio::Tools::PrositeScan(3)NAMEBio::Tools::PrositeScan - Parser for ps_scan result
SYNOPSIS
use Bio::Tools::PrositeScan;
my $factory = Bio::Tools::PrositeScan->new(
-file => 'out.PrositeScan'
);
while(my $match = $factory->next_prediction){
# $match is of Bio::SeqFeature::FeaturePair
my $q_id = $fatch->feature1->seq_id;
my $h_id = $fatch->feature2->seq_id;
}
DESCRIPTION
This is the parser of the output of ps_scan program. It takes either a
file handler or a file name, and returns a Bio::SeqFeature::FeaturePair
object.
AUTHOR
Juguang Xiao, juguang@tll.org.sg
new
Title : new
Usage : Bio::Tools::PrositeScan->new(-file => 'out.PrositeScan');
Bio::Tools::PrositeScan->new(-fh => \*FH);
Returns : L<Bio::Tools::PrositeScan>
next_prediction
Title : new
Usage :
while($result = $factory->next_prediction){
;
}
Returns : a Bio::SeqFeature::FeaturePair object
perl v5.14.1 2011-07-22 Bio::Tools::PrositeScan(3)
