Bio::SeqIO::lasergene(User Contributed Perl DocumentatBio::SeqIO::lasergene(3)NAMEBio::SeqIO::lasergene - Lasergene sequence file input/output stream
SYNOPSIS
Do not use this module directly. Use it via the Bio::SeqIO class.
DESCRIPTION
This object can product Bio::Seq::RichSeq objects from Lasergene
sequence files.
IT DOES NOT PARSE ANY ATTIBUTE VALUE PAIRS IN THE HEADER OF THE
LASERGENE FORMATTED FILE.
IT DOES NOT WRITE THESE FILES EITHER.
REFERENCES
https://www.dnastar.com/products/lasergene.php
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.bioperl.org
AUTHORS
Torsten Seemann - torsten.seemann AT infotech.monash.edu.au
Malcolm Cook - mec AT stowers-institute.org
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
next_seq
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : Bio::Seq object
Args : none
write_seq (NOT IMPLEMENTED)
Title : write_seq
Usage : $stream->write_seq($seq)
Function: writes the $seq object into the stream
Returns : 1 for success and 0 for error
Args : Array of Bio::PrimarySeqI objects
perl v5.14.1 2011-07-22 Bio::SeqIO::lasergene(3)