Bio::Search::Result::WUsereContributed Perl Bio::Search::Result::WABAResult(3)NAMEBio::Search::Result::WABAResult - Result object for WABA alignment
output
SYNOPSIS
# use this object exactly as you would a GenericResult # the only extra
method is query_database which is the # name of the file where the
query sequence came from
DESCRIPTION
This object is for WABA result output, there is little difference
between this object and a GenericResult save the addition of one method
query_database. Expect many of the fields for GenericResult to be
empty however as WABA was not intended to provide a lot of extra
information other than the alignment.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Search::Result::WABAResult->new();
Function: Builds a new Bio::Search::Result::WABAResult object
Returns : Bio::Search::Result::WABAResult
Args : -query_database => "name of the database where the query came from"
query_database
Title : query_database
Usage : $obj->query_database($newval)
Function: Data field for the database filename where the
query sequence came from
Returns : value of query_database
Args : newvalue (optional)
All other methods are inherited from Bio::Search::Result::GenericResult
See the Bio::Search::Result::GenericResult for complete documentation
of the rest of the methods that are available for this module.
perl v5.14.12011-07-22Bio::Search::Result::WABAResult(3)