Bio::Matrix::IO::phyliUser Contributed Perl DocumentBio::Matrix::IO::phylip(3)NAMEBio::Matrix::IO::phylip - A parser for PHYLIP distance matricies
SYNOPSIS
use Bio::Matrix::IO;
my $parser = Bio::Matrix::IO->new(-format => 'phylip',
-file => 't/data/phylipdist.out');
my $matrix = $parser->next_matrix;
DESCRIPTION
This is a parser for PHYLIP distance matrix output.
FEEDBACK
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bioperl-l@bioperl.org - General discussion
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Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason-at-bioperl-dot.org
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Matrix::IO::phylip->new();
Function: Builds a new Bio::Matrix::IO::phylip object
Returns : an instance of Bio::Matrix::IO::phylip
Args :
next_matrix
Title : next_matrix
Usage : my $matrix = $parser->next_matrix
Function: Get the next result set from parser data
Returns : L<Bio::Matrix::PhylipDist>
Args : none
write_matrix
Title : write_matrix
Usage : $matio->write_matrix($matrix)
Function: Write out a matrix in the phylip distance format
Returns : none
Args : L<Bio::Matrix::PhylipDist>
perl v5.14.1 2011-07-22 Bio::Matrix::IO::phylip(3)