Bio::LiveSeq::DNA man page on Pidora

Bio::LiveSeq::DNA man page on Pidora

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Bio::LiveSeq::DNA(3)  User Contributed Perl Documentation Bio::LiveSeq::DNA(3)

NAME
       Bio::LiveSeq::DNA - DNA object for LiveSeq

SYNOPSIS
	 # documentation needed

DESCRIPTION
       This holds the DNA sequence (or the RNA in the case of cDNA entries)
       and is accessed by exons, genes, transcripts... objects

AUTHOR - Joseph A.L. Insana
       Email:  Insana@ebi.ac.uk, jinsana@gmx.net

APPENDIX
       The rest of the documentation details each of the object methods.
       Internal methods are usually preceded with a _

   new
	 Title	 : new
	 Usage	 : $dna = Bio::LiveSeq::DNA->new(-seq => "atcgaccaatggacctca",
						 -offset => 3 );

	 Function: generates a new Bio::LiveSeq::DNA
	 Returns : reference to a new object of class DNA
	 Errorcode -1
	 Args	 : a string
	       AND an optional offset to create nucleotide labels (default is 1, i.e.
		   starting the count of labels from "1") -> do not bother using it ->
		   it could be used by alternative loaders !EMBL format
	 NOTE	 : strand of DNA is set to 1 by default

perl v5.14.1			  2011-07-22		  Bio::LiveSeq::DNA(3)

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