BP_SPLIT_SEQ(1) User Contributed Perl Documentation BP_SPLIT_SEQ(1)NAME
bp_split_seq - splits a sequence into equal sized chunks with an
optional
overlapping range
SYNOPSIS
bp_split_seq -c 10000 [-o 1000] [-i] -f seq.in
DESCRIPTION
The script will split sequences into chunks
Mandatory Options:
-c Desired length of the resulting sequences.
-f Input file (must be FASTA format).
Special Options:
-o Overlapping range between the resulting sequences.
-i Create an index file with the resulting sequence files. This is
useful if you want to pass this list as input arguments into
another programs (i.e. CLUSTAL, HMMER, etc.).
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of
the bugs and their resolution. Bug reports can be submitted via the
web:
https://github.com/bioperl/bioperl-live/issues
AUTHORS
Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt>
(some enhancements)
perl v5.20.2 2015-09-15 BP_SPLIT_SEQ(1)
