bp_oligo_count.pl man page on Fedora

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BP_OLIGO_COUNT(1)     User Contributed Perl Documentation    BP_OLIGO_COUNT(1)

NAME
       oligo_count - oligo count and frequency

SYNOPSIS
	 Usage:	 oligo_count [-h/--help] [-l/--length OLIGOLENGTH]
		 [-f/--format SEQFORMAT] [-i/--in/-s/--sequence SEQFILE]
		 [-o/--out OUTFILE]

DESCRIPTION
       This scripts counts occurrence and frequency for all oligonucleotides
       of given length.

       It can be used to determine what primers are useful for frequent
       priming of nucleic acid for random labeling.

       Note that this script could be run by utilizing the compseq program
       which is part of EMBOSS.

OPTIONS
       The default sequence format is fasta. If no outfile is given, the
       results will be printed to standard out. All other options can entered
       interactively.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs and their resolution. Bug reports can be submitted via the
       web:

	 http://bugzilla.open-bio.org/

AUTHOR - Charles C. Kim
       Email cckim@stanford.edu

HISTORY
       Written July 2, 2001

       Submitted to bioperl scripts project 2001/08/06

       >> 100 x speed optimization by Heikki Lehvaslaiho

perl v5.14.1			  2011-07-22		     BP_OLIGO_COUNT(1)
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