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BP_MULTI_HMMSEARCH(1) User Contributed Perl DocumentationBP_MULTI_HMMSEARCH(1)
NAME
multi_hmmsearch - perform a hmmsearch into multiple FASTA files using
an INDEX file
SYNOPSIS
multi_hmmsearch -p hmm_file [-i] -f index_file
DESCRIPTION
Not technically a Bio::Tools::Run script as this doesn't use any
Bioperl or Bioperl-run components but it's useful.
Mandatory Options:
-p HMM profile to use for the search.
-f INDEX file that contains a list of FASTA files for the multiple
search.
Special Options:
-i Create a new index file with the resulting hmms files. This is
useful if you want to pass this list as input arguments into
another programs.
-h Show this documentation.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
AUTHOR
Mauricio Herrera Cuadra <arareko-at-campus.iztacala.unam.mx>
perl v5.14.1 2011-07-21 BP_MULTI_HMMSEARCH(1)
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