bp_mrtrans.pl man page on DragonFly

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BP_MRTRANS(1)	      User Contributed Perl Documentation	 BP_MRTRANS(1)

NAME
       bp_mrtrans - implement a transformer of alignments from protein to mrna
       coordinates

SYNOPSIS
       Usage:
	 bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output
       format] [-s cDNA sequence database]  [-sf cDNA sequence format] [-h]

DESCRIPTION
       This script will convert a protein alignment back into a cDNA.  Loosely
       based on Bill Pearson's mrtrans.

       The options are:

	  -o filename	       - the output filename [default STDOUT]
	  -of format	       - output sequence format
				 (multiple sequence alignment)
				 [default phylip]
	  -i filename	       - the input filename [required]
	  -if format	       - input sequence format
				 (multiple sequence alignment)
				 [ default clustalw]
	  -s --seqdb filename  - the cDNA sequence database file
	  -sf --seqformat      - the cDNA seq db format (flatfile sequence format)
	  -h		       - this help menu

AUTHOR
       Jason Stajich, jason-at-bioperl-dot-org

perl v5.20.2			  2015-09-15			 BP_MRTRANS(1)
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