BP_GCCALC(1) User Contributed Perl Documentation BP_GCCALC(1)NAME
bp_gccalc - GC content of nucleotide sequences
SYNOPSIS
bp_gccalc [-f/--format FORMAT] [-h/--help] filename
or
bp_gccalc [-f/--format FORMAT] < filename
or
bp_gccalc [-f/--format FORMAT] -i filename
DESCRIPTION
This scripts prints out the GC content for every nucleotide sequence
from the input file.
OPTIONS
The default sequence format is fasta.
The sequence input can be provided using any of the three methods:
unnamed argument
bp_gccalc filename
named argument
bp_gccalc -i filename
standard input
bp_gccalc < filename
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of
the bugs and their resolution. Bug reports can be submitted via the
web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR - Jason Stajich
Email jason@bioperl.org
HISTORY
Based on script code (see bottom) submitted by cckim@stanford.edu
Submitted as part of bioperl script project 2001/08/06
perl v5.20.2 2015-09-15 BP_GCCALC(1)