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Bio::Variation::IO::flUser)Contributed Perl DocumenBio::Variation::IO::flat(3)
NAME
Bio::Variation::IO::flat - flat file sequence variation input/output
stream
SYNOPSIS
Do not use this module directly. Use it via the Bio::Variation::IO
class.
DESCRIPTION
This object can transform Bio::Variation::SeqDiff objects to and from
flat file databases.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing lists Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
AUTHOR - Heikki Lehvaslaiho
Email: heikki-at-bioperl-dot-org
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
next
Title : next
Usage : $haplo = $stream->next()
Function: returns the next seqDiff in the stream
Returns : Bio::Variation::SeqDiff object
Args : NONE
write
Title : write
Usage : $stream->write(@seqDiffs)
Function: writes the $seqDiff object into the stream
Returns : 1 for success and 0 for error
Args : Bio::Variation::SeqDiff object
perl v5.14.1 2011-07-22 Bio::Variation::IO::flat(3)
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