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Bio::TreeIO::tabtree(3User Contributed Perl DocumentatiBio::TreeIO::tabtree(3)

NAME
       Bio::TreeIO::tabtree - A simple output format which displays a tree as
       an ASCII drawing

SYNOPSIS
	 use Bio::TreeIO;
	 my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick');
	 my $out = Bio::TreeIO->new(-file => '>output', -format => 'tabtree');

	 while( my $tree = $in->next_tree ) {
	     $out->write_tree($tree);
	 }

DESCRIPTION
       This is a made up format just for outputting trees as an ASCII drawing.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs and their resolution. Bug reports can be submitted via the
       web:

	 http://bugzilla.open-bio.org/

AUTHOR - Jason Stajich
       Email jason@bioperl.org

APPENDIX
       The rest of the documentation details each of the object methods.
       Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::TreeIO::tabtree->new();
	Function: Builds a new Bio::TreeIO::tabtree object
	Returns : Bio::TreeIO::tabtree
	Args	:

   write_tree
	Title	: write_tree
	Usage	: $treeio->write_tree($tree);
	Function: Write a tree out to data stream in newick/phylip format
	Returns : none
	Args	: Bio::Tree::TreeI object

   next_tree
	Title	: next_tree
	Usage	:
	Function: Sorry not possible with this format
	Returns : none
	Args	: none

perl v5.14.1			  2011-07-22	       Bio::TreeIO::tabtree(3)
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