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Bio::Tools::Hmmpfam(3)User Contributed Perl DocumentatioBio::Tools::Hmmpfam(3)

NAME
       Bio::Tools::Hmmpfam - Parser for Hmmpfam program

SYNOPSIS
	 use Bio::Tools::Hmmpfam;
	 my @hmmpfam_feat;
	 my $hmmpfam_parser = Bio::Tools::Hmmpfam->new(-fh =>$filehandle );
	 while( my $hmmpfam_feat = $hmmpfam_parser->next_result ) {
	       push @hmmpfam_feat, $hmmpfam_feat;
	 }

DESCRIPTION
       Parser for Hmmpfam  program.  See also Bio::SearchIO::hmmer.

FEEDBACK
   Mailing Lists
	User feedback is an integral part of the evolution of this and other
	Bioperl modules. Send your comments and suggestions preferably to
	the Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs and their resolution. Bug reports can be submitted via the
       web:

	 http://bugzilla.open-bio.org/

AUTHOR - Balamurugan Kumarasamy
	Email: fugui@worf.fugu-sg.org

APPENDIX
	The rest of the documentation details each of the object methods.
	Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Tools::Hmmpfam->new(-fh=>$filehandle);
	Function: Builds a new Bio::Tools::Hmmpfam object
	Returns : Bio::Tools::Hmmpfam
	Args	: -filename
		  -fh (filehandle)

   next_result
	Title	: next_result
	Usage	: my $feat = $hmmpfam_parser->next_result
	Function: Get the next result set from parser data
	Returns : L<Bio::SeqFeature::Generic>
	Args	: none

   create_feature
	Title	: create_feature
	Usage	: my $feat=$hmmpfam_parser->create_feature($feature,$seqname)
	Function: creates a SeqFeature Generic object
	Returns : L<Bio::SeqFeature::Generic>
	Args	:

   seqname
	Title	:   seqname
	Usage	:   obj->seqname($seqname)
	Function:   Internal(not to be used directly)
	Returns :
	Args	:   seqname

perl v5.14.1			  2011-07-22		Bio::Tools::Hmmpfam(3)
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