Bio::Tools::Blat(3) User Contributed Perl Documentation Bio::Tools::Blat(3)NAMEBio::Tools::Blat - parser for Blat program
SYNOPSIS
use Bio::Tools::Blat;
my $blat_parser = Bio::Tools::Blat->new(-fh =>$filehandle );
while( my $blat_feat = $blat_parser->next_result ) {
push @blat_feat, $blat_feat;
}
DESCRIPTION
Parser for Blat program
FEEDBACK
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bioperl-l@bioperl.org - General discussion
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Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted the
web:
http://bugzilla.open-bio.org/
AUTHOR - Balamurugan Kumarasamy
Email: bala@tll.org.sg
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Tools::Blat->new(-fh=>$filehandle);
Function: Builds a new Bio::Tools::Blat object
Returns : Bio::Tools::Blat
Args : -filename
-fh (filehandle)
next_result
Title : next_result
Usage : my $feat = $blat_parser->next_result
Function: Get the next result set from parser data
Returns : L<Bio::SeqFeature::Generic>
Args : none
create_feature
Title : create_feature
Usage : my $feat=$blat_parser->create_feature($feature,$seqname)
Function: creates a SeqFeature Generic object
Returns : L<Bio::SeqFeature::Generic>
Args :
perl v5.14.1 2011-07-22 Bio::Tools::Blat(3)
