Bio::Symbol::AlphabetI man page on Fedora

Man page or keyword search:  
man Server   31170 pages
apropos Keyword Search (all sections)
Output format
Fedora logo
[printable version]

Bio::Symbol::AlphabetIUser Contributed Perl DocumentaBio::Symbol::AlphabetI(3)

NAME
       Bio::Symbol::AlphabetI - A Symbol Alphabet

SYNOPSIS
	   # get a Bio::Symbol::AlphabetI object somehow
	   my @symbols = $alphabet->symbols;
	   my @subalphas = $alphabet->alphabets;
	   if( $alphabet->contains($symbol) ) {
	       # do something
	   }

DESCRIPTION
       Alphabet contains set of symbols, which can be concatenated to form
       symbol lists. Sequence string, for example, is stringified
       representation of the symbol list (tokens of symbols).

       This module was implemented for the purposes of meeting the
       BSANE/BioCORBA spec 0.3 only.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs and their resolution. Bug reports can be submitted via the
       web:

	 http://bugzilla.open-bio.org/

AUTHOR - Jason Stajich
       Email jason@bioperl.org

APPENDIX
       The rest of the documentation details each of the object methods.
       Internal methods are usually preceded with a _

   AlphabetI Interface methods
   symbols
	Title	: symbols
	Usage	: my @symbols = $alphabet->symbols();
	Function: Get/Set Symbol list for an alphabet
		  List of symbols, which make up this alphabet.
	Returns : Array of L<Bio::Symbol::SymbolI> objects
	Args	: (optional) Array of L<Bio::Symbol::SymbolI> objects

   alphabets
	Title	: alphabets
	Usage	: my @alphabets = $alphabet->alphabets();
	Function: Get/Set Sub Alphabet list for an alphabet
		  Sub-alphabets. E.g. codons made from DNAxDNAxDNA alphabets
	Returns : Array of L<Bio::Symbol::AlphabetI> objects
	Args	: (optional) Array of L<Bio::Symbol::AlphabetI> objects

   contains
	Title	: contains
	Usage	: if($alphabet->contains($symbol)) { }
	Function: Tests of Symbol is contained in this alphabet
	Returns : Boolean
	Args	: L<Bio::Symbol::SymbolI>

perl v5.14.1			  2011-07-22	     Bio::Symbol::AlphabetI(3)
[top]

List of man pages available for Fedora

Copyright (c) for man pages and the logo by the respective OS vendor.

For those who want to learn more, the polarhome community provides shell access and support.

[legal] [privacy] [GNU] [policy] [cookies] [netiquette] [sponsors] [FAQ]
Tweet
Polarhome, production since 1999.
Member of Polarhome portal.
Based on Fawad Halim's script.
....................................................................
Vote for polarhome
Free Shell Accounts :: the biggest list on the net