Bio::SeqIO::locuslink man page on Pidora

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Bio::SeqIO::locuslink(User Contributed Perl DocumentatBio::SeqIO::locuslink(3)

NAME
       Bio::SeqIO::locuslink - LocusLink input/output stream

SYNOPSIS
	  # don't instantiate directly - instead do
	  my $seqio = Bio::SeqIO->new(-format => "locuslink", -file => \STDIN);

DESCRIPTION
       This module parses LocusLink into Bio::SeqI objects with rich
       annotation, but no sequence.

       The input file has to be in the LL_tmpl format - the tabular format
       will not work.

       The way the current implementation populates the object is rather a
       draft work than a finished work of art. Note that at this stage the
       LocusLink entries cannot be round-tripped, because the parser loses
       certain information. For instance, most of the alternative transcript
       descriptions are not retained. The parser also misses any element that
       deals with visual representation (e.g., 'button') except for the URLs.
       Almost all of the pieces of the annotation are kept in a
       Bio::Annotation::Collection object, see Bio::Annotation::Collection for
       more information.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs and their resolution. Bug reports can be submitted via the
       web:

	 http://bugzilla.open-bio.org/

AUTHOR - Keith Ching
       Email kching at gnf.org

CONTRIBUTORS
       Hilmar Lapp, hlapp at gmx.net

APPENDIX
       The rest of the documentation details each of the object methods.
       Internal methods are usually preceded with a _

perl v5.14.1			  2011-07-22	      Bio::SeqIO::locuslink(3)
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