Bio::Matrix::IO::phylip man page on Fedora

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Bio::Matrix::IO::phyliUser Contributed Perl DocumentBio::Matrix::IO::phylip(3)

NAME
       Bio::Matrix::IO::phylip - A parser for PHYLIP distance matricies

SYNOPSIS
	 use Bio::Matrix::IO;
	 my $parser = Bio::Matrix::IO->new(-format   => 'phylip',
					  -file	    => 't/data/phylipdist.out');
	 my $matrix = $parser->next_matrix;

DESCRIPTION
       This is a parser for PHYLIP distance matrix output.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs and their resolution. Bug reports can be submitted via the
       web:

	 http://bugzilla.open-bio.org/

AUTHOR - Jason Stajich
       Email jason-at-bioperl-dot.org

APPENDIX
       The rest of the documentation details each of the object methods.
       Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Matrix::IO::phylip->new();
	Function: Builds a new Bio::Matrix::IO::phylip object
	Returns : an instance of Bio::Matrix::IO::phylip
	Args	:

   next_matrix
	Title	: next_matrix
	Usage	: my $matrix = $parser->next_matrix
	Function: Get the next result set from parser data
	Returns : L<Bio::Matrix::PhylipDist>
	Args	: none

   write_matrix
	Title	: write_matrix
	Usage	: $matio->write_matrix($matrix)
	Function: Write out a matrix in the phylip distance format
	Returns : none
	Args	: L<Bio::Matrix::PhylipDist>

perl v5.14.1			  2011-07-22	    Bio::Matrix::IO::phylip(3)
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