Bio::Factory::SeqAnalysisParserFactoryI man page on Pidora

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Bio::Factory::SeqAnalyUseraContributBio::Factory::SeqAnalysisParserFactoryI(3)

NAME
       Bio::Factory::SeqAnalysisParserFactoryI - interface describing objects
       capable
		     of creating SeqAnalysisParserI compliant parsers

SYNOPSIS
	   # initialize an object implementing this interface, e.g.
	   $factory = Bio::Factory::SeqAnalysisParserFactory->new();
	   # obtain a parser object
	   $parser = $factory->get_parser(-input=>$inputobj,
					  -params=>[@params],
					  -method => $method);
	   # $parser is an object implementing Bio::SeqAnalysisParserI
	   # annotate sequence with features produced by parser
	   while(my $feat = $parser->next_feature()) {
	       $seq->add_SeqFeature($feat);
	   }

DESCRIPTION
       This is an interface for factory classes capable of instantiating
       SeqAnalysisParserI implementing parsers.

       The concept behind the interface is a generic analysis result parsing
       in high-throughput automated sequence annotation pipelines. See
       Bio::SeqAnalysisParserI for more documentation of this concept.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably
	to one of the Bioperl mailing lists.  Your participation is much
       appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track
       the bugs and their resolution.  Bug reports can be submitted via the
       web:

	 http://bugzilla.open-bio.org/

AUTHOR - Hilmar Lapp, Jason Stajich
       Email Hilmar Lapp <hlapp@gmx.net>, Jason Stajich <jason@bioperl.org>

APPENDIX
       The rest of the documentation details each of the object methods.
       Internal methods are usually preceded with a _

   get_parser
	Title	: get_parser
	Usage	: $factory->get_parser(-input=>$inputobj,
				       [ -params=>[@params] ],
				       -method => $method)
	Function: Creates and returns a parser object for the given input and method.
		  The type of input which is suitable depends on the implementation,
		  but a good-style implementation should allow both file names and
		  streams (filehandles).

		  A particular implementation may not be able to create a parser for
		  the requested method. In this case it shall return undef.

		  Parameters (-params argument) are passed on to the parser object
		  and therefore are specific to the parser to be created. An
		  implementation of this interface should make this argument optional.
	Example :
	Returns : A Bio::SeqAnalysisParserI implementing object.
	Args	: B<input>  - object/file where analysis results are coming from,
		  B<params> - parameter to use when parsing/running analysis
		  B<method> - method of analysis

perl v5.14.1			  20Bio::Factory::SeqAnalysisParserFactoryI(3)
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