Bio::Factory::AnalysisUser Contributed Perl DocumentBio::Factory::AnalysisI(3)NAMEBio::Factory::AnalysisI - An interface to analysis tool factory
SYNOPSIS
This is an interface module - you do not instantiate it. Use
Bio::Tools::Run::AnalysisFactory module:
use Bio::Tools::Run::AnalysisFactory;
my $list = Bio::Tools::Run::AnalysisFactory->new->available_analyses;
DESCRIPTION
This interface contains all public methods for showing available
analyses and for creating objects representing them.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
AUTHOR
Martin Senger (martin.senger@gmail.com)
COPYRIGHT
Copyright (c) 2003, Martin Senger and EMBL-EBI. All Rights Reserved.
This module is free software; you can redistribute it and/or modify it
under the same terms as Perl itself.
DISCLAIMER
This software is provided "as is" without warranty of any kind.
SEE ALSO
ยท http://www.ebi.ac.uk/Tools/webservices/soaplab/guide
APPENDIX
This is actually the main documentation...
If you try to call any of these methods directly on this
"Bio::Factory::AnalysisI" object you will get a not implemented error
message. You need to call them on a "Bio::Tools::Run::AnalysisFactory"
object instead.
available_categories
Usage : $factory->available_categories;
Returns : an array reference with the names of
available categories
Args : none
The analysis tools may be grouped into categories by their functional
similarity, or by the similar data types they deal with. This method
shows all available such categories.
available_analyses
Usage : $factory->available_analyses;
$factory->available_analyses ($category);
Returns : an array reference with the names of
all available analyses, or the analyses
available in the given '$category'
Args : none || category_name
Show available analyses. Their names usually consist of category
analysis names, separated by "::".
create_analysis
Usage : $factory->create_analysis ($name);
Returns : a Bio::Tools::Run::Analyis object
Args : analysis name
A real factory method creating an analysis object. The created object
gets all access and location information from the factory object.
perl v5.14.1 2011-07-22 Bio::Factory::AnalysisI(3)
