Bio::DB::InMemoryCache man page on Pidora

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Bio::DB::InMemoryCacheUser Contributed Perl DocumentaBio::DB::InMemoryCache(3)

NAME
       Bio::DB::InMemoryCache - Abstract interface for a sequence database

SYNOPSIS
	 $cachedb = Bio::DB::InMemoryCache->new( -seqdb => $real_db,
						 -number => 1000);
	 #
	 # get a database object somehow using a concrete class
	 #

	 $seq = $cachedb->get_Seq_by_id('ROA1_HUMAN');

	 #
	 # $seq is a Bio::Seq object
	 #

DESCRIPTION
       This is a memory cache system which saves the objects returned by
       Bio::DB::RandomAccessI in memory to a hard limit of sequences.

CONTACT
       Ewan Birney <birney@ebi.ac.uk>

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track
       the bugs and their resolution. Bug reports can be submitted via the
       web:

	 http://bugzilla.open-bio.org/

APPENDIX
       The rest of the documentation details each of the object methods.
       Internal methods are usually preceded with a _

   get_Seq_by_id
	Title	: get_Seq_by_id
	Usage	: $seq = $db->get_Seq_by_id('ROA1_HUMAN')
	Function: Gets a Bio::Seq object by its name
	Returns : a Bio::Seq object
	Args	: the id (as a string) of a sequence
	Throws	: "id does not exist" exception

   get_Seq_by_acc
	Title	: get_Seq_by_acc
	Usage	: $seq = $db->get_Seq_by_acc('X77802');
	Function: Gets a Bio::Seq object by accession number
	Returns : A Bio::Seq object
	Args	: accession number (as a string)
	Throws	: "acc does not exist" exception

   get_Seq_by_version
	Title	: get_Seq_by_version
	Usage	: $seq = $db->get_Seq_by_version('X77802.1');
	Function: Gets a Bio::Seq object by sequence version
	Returns : A Bio::Seq object
	Args	: accession.version (as a string)
	Throws	: "acc.version does not exist" exception

perl v5.14.1			  2011-07-22	     Bio::DB::InMemoryCache(3)
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