Bio::DB::GFF::Aggregator::orf man page on Fedora

Bio::DB::GFF::Aggregator::orf man page on Fedora

Man page or keyword search:
man Server 31170 pages
apropos Keyword Search (all sections)
Output format

Bio::DB::GFF::AggregatUseroContributed Perl DoBio::DB::GFF::Aggregator::orf(3)

NAME
       Bio::DB::GFF::Aggregator::orf -- An aggregator for orf regions

SYNOPSIS
	 use Bio::DB::GFF;

	 # Open the sequence database
	 my $db	     = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
					  -dsn	   => 'dbi:mysql:elegans42',
					  -aggregator => ['orf','clone'],
					);

	---------------------------
	Aggregator method: orf
	Main method:	   -none-
	Sub methods:	   ORF
	---------------------------

DESCRIPTION
       Bio::DB::GFF::Aggregator::orf was written to work with the "cds" glyph.
       GFF files.  It aggregates raw "ORF" features into "coding" features.
       This is basically identical to the "coding" aggregator, except that it
       looks for features of type "ORF" rather than "cds".

   method
	Title	: method
	Usage	: $aggregator->method
	Function: return the method for the composite object
	Returns : the string "orf"
	Args	: none
	Status	: Public

   part_names
	Title	: part_names
	Usage	: $aggregator->part_names
	Function: return the methods for the sub-parts
	Returns : the list "CDS"
	Args	: none
	Status	: Public

BUGS
       None reported.

SEE ALSO
       Bio::DB::GFF, Bio::DB::GFF::coding, Bio::DB::GFF::Aggregator,
       Bio::Graphics::Glyph::cds

AUTHOR
       Lincoln Stein <lstein@cshl.org>.

       Copyright (c) 2001 Cold Spring Harbor Laboratory.

       This library is free software; you can redistribute it and/or modify it
       under the same terms as Perl itself.

perl v5.14.1			  2011-07-22  Bio::DB::GFF::Aggregator::orf(3)

[top]

List of man pages available for Fedora

Copyright (c) for man pages and the logo by the respective OS vendor.

For those who want to learn more, the polarhome community provides shell access and support.

[legal] [privacy] [GNU] [policy] [cookies] [netiquette] [sponsors] [FAQ]

Polarhome, production since 1999.
Member of Polarhome portal.
Based on Fawad Halim's script.
....................................................................

Vote for polarhome