Bio::Coordinate::MapperI man page on Pidora

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Bio::Coordinate::MappeUser)Contributed Perl DocumenBio::Coordinate::MapperI(3)

NAME
       Bio::Coordinate::MapperI - Interface describing coordinate mappers

SYNOPSIS
	 # not to be used directly

DESCRIPTION
       MapperI defines methods for classes capable for mapping locations
       between coordinate systems.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing lists  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       report bugs to the Bioperl bug tracking system to help us keep track
       the bugs and their resolution.  Bug reports can be submitted via the
       web:

	 http://bugzilla.open-bio.org/

AUTHOR - Heikki Lehvaslaiho
       Email:  heikki-at-bioperl-dot-org

APPENDIX
       The rest of the documentation details each of the object methods.
       Internal methods are usually preceded with a _

   in
	Title	: in
	Usage	: $obj->in('peptide');
	Function: Set and read the input coordinate system.
	Example :
	Returns : value of input system
	Args	: new value (optional), Bio::LocationI

   out
	Title	: out
	Usage	: $obj->out('peptide');
	Function: Set and read the output coordinate system.
	Example :
	Returns : value of output system
	Args	: new value (optional), Bio::LocationI

   swap
	Title	: swap
	Usage	: $obj->swap;
	Function: Swap the direction of mapping: input <-> output)
	Example :
	Returns : 1
	Args	:

   test
	Title	: test
	Usage	: $obj->test;
	Function: test that both components are of same length
	Example :
	Returns : ( 1 | undef )
	Args	:

   map
	Title	: map
	Usage	: $newpos = $obj->map($loc);
	Function: Map the location from the input coordinate system
		  to a new value in the output coordinate system.
	Example :
	Returns : new value in the output coordiante system
	Args	: Bio::LocationI

   return_match
	Title	: return_match
	Usage	: $obj->return_match(1);
	Function: A flag to turn on the simplified mode of
		  returning only one joined Match object or undef
	Example :
	Returns : boolean
	Args	: boolean (optional)

perl v5.14.1			  2011-07-22	   Bio::Coordinate::MapperI(3)
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