Bio::Annotation::AnnotationFactory man page on Fedora

Man page or keyword search:  
man Server   31170 pages
apropos Keyword Search (all sections)
Output format
Fedora logo
[printable version]

Bio::Annotation::AnnotUsernContributed PeBio::Annotation::AnnotationFactory(3)

NAME
       Bio::Annotation::AnnotationFactory - Instantiates a new
       Bio::AnnotationI (or derived class) through a factory

SYNOPSIS
	   use Bio::Annotation::AnnotationFactory;
	   #
	   my $factory = Bio::Annotation::AnnotationFactory->new(
			   -type => 'Bio::Annotation::SimpleValue');
	   my $ann = $factory->create_object(-value => 'peroxisome',
					     -tagname => 'cellular component');

DESCRIPTION
       This object will build Bio::AnnotationI objects generically.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs and their resolution. Bug reports can be submitted via the
       web:

	 http://bugzilla.open-bio.org/

AUTHOR - Hilmar Lapp
       Email hlapp at gmx.net

CONTRIBUTORS
       This is mostly copy-and-paste with subsequent adaptation from
       Bio::Seq::SeqFactory by Jason Stajich. Most credits should in fact go
       to him.

APPENDIX
       The rest of the documentation details each of the object methods.
       Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Annotation::AnnotationFactory->new();
	Function: Builds a new Bio::Annotation::AnnotationFactory object
	Returns : Bio::Annotation::AnnotationFactory
	Args	: -type => string, name of a L<Bio::AnnotationI> derived class.

       If type is not set the module guesses it based on arguments passed to
       method create_object.

   create_object
	Title	: create_object
	Usage	: my $seq = $factory->create_object(<named parameters>);
	Function: Instantiates new Bio::AnnotationI (or one of its child classes)

		  This object allows us to genericize the instantiation of
		  cluster objects.

	Returns : L<Bio::AnnotationI> compliant object
		  The return type is configurable using new(-type =>"...").
	Args	: initialization parameters specific to the type of annotation
		  object we want.

   type
	Title	: type
	Usage	: $obj->type($newval)
	Function: Get/set the type of L<Bio::AnnotationI> object to be created.

		  This may be changed at any time during the lifetime of this
		  factory.

	Returns : value of type
	Args	: newvalue (optional)

   _guess_type
	Title	: _guess_type
	Usage	:
	Function: Guesses the right type of L<Bio::AnnotationI> implementation
		  based on initialization parameters for the prospective
		  object.
	Example :
	Returns : the type (a string, the module name)
	Args	: initialization parameters to be passed to the prospective
		  cluster object

perl v5.14.1			  2011-07Bio::Annotation::AnnotationFactory(3)
[top]

List of man pages available for Fedora

Copyright (c) for man pages and the logo by the respective OS vendor.

For those who want to learn more, the polarhome community provides shell access and support.

[legal] [privacy] [GNU] [policy] [cookies] [netiquette] [sponsors] [FAQ]
Tweet
Polarhome, production since 1999.
Member of Polarhome portal.
Based on Fawad Halim's script.
....................................................................
Vote for polarhome
Free Shell Accounts :: the biggest list on the net