Ace::Graphics::Glyph::UsersContributed PerlAce::Graphics::Glyph::transcript(3)NAMEAce::Graphics::Glyph::transcript - The "gene" glyph
SYNOPSIS
See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.
DESCRIPTION
This glyph draws a series of filled rectangles connected by up-angled
connectors or "hats". The rectangles indicate exons; the hats are
introns. The direction of transcription is indicated by a small arrow
at the end of the glyph, rightward for the + strand.
The feature must respond to the exons() and optionally introns()
methods, or it will default to the generic display. Implied introns
(not returned by the introns() method) are drawn in a contrasting color
to explicit introns.
OPTIONS
In addition to the common options, the following glyph-specific option
is recognized:
Option Description Default
------------------------
-implied_intron_color The color to use for gaps gray
not returned by the introns()
method.
-draw_arrow Whether to draw arrowhead true
indicating direction of
transcription.
BUGS
Please report them.
SEE ALSO
Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel,
Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow,
Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box,
Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments,
Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,
AUTHOR
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it
under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.12001-05-2Ace::Graphics::Glyph::transcript(3)
